Deletion Detective.

Drop fastq.gz files here.

They must contain _R1* and _R2* and will be processed as pairs if multiple are uploaded.
Select a genome: 

 

 

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Deletion Detection Pipeline Overview

  • FastQC analysis of input reads
  • Parallel processing of paired-end data
  • Automated quality reporting

  • Alignment-based deletion detection
  • Visual plot generation of deletions
  • Coverage analysis across target regions
  • Variant calling with Freebayes

  • Generates indexed BAM files
  • Creates deletion visualization plots
  • Produces VCF files for variants
  • Automatic cleanup of intermediate files